Screening of Bacterial Isolates from Cow Manure with Potential as Antagonist Agents against Alternaria porri (Ellis) Cif.

Sherin Rizkina, Syukria Ikhsan Zam, Mokhamad Irfan, Irwan Taslapratama, Yusmar Mahmud, Siti Zulaiha, Oksana Oksana, Nida Wafiqah Nabila M. Solin

Abstract


Environmentally friendly control of Alternaria porri (Ellis) Cif. can be carried out using antagonistic agents such as bacteria. Exploration of bacterial sources as antagonistic agents needs to be continuously conducted, one of which is from cattle manure. This study aimed to obtain potential antagonistic bacteria against A. porri. Samples were collected using a purposive sampling technique. Bacterial isolation was performed using the spread plate method from dilutions of 10⁻⁶ to 10⁻⁸. Antagonistic activity was assessed using the dual culture method. This research obtained four isolates—PKa, PKb, PKc, and PKd—with cell counts ranging from 0.12 × 10⁹ to 1.83 × 10⁹ CFU g⁻¹. All isolates belonged to the Gram-positive group. Isolate PKa exhibited no catalase activity, whereas isolates PKb, PKc, and PKd showed catalase activity. PKa was identified as Clostridium, while PKb, PKc, and PKd were identified as Bacillus. All isolates demonstrated potential as antagonistic agents, with antagonistic activity ranging from 82% to 90%.

Keywords


Biological control; Bacillus; Clostridium; Purple blotch; Antifungal activity

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References


[1] J. H. C. Woudenberg, M. Truter, J. Z. Groenewald, and P. W. Crous, “Large-spored Alternaria pathogens in section porri disentangled,” Stud. Mycol., vol. 79, no. 1, pp. 1–47, Sep. 2014, doi: 10.1016/j.simyco.2014.07.003.

[2] S. M. Mohsin, Md. R. Islam, A. N. F. Ahmed, H. A. C. Nisha, and M. Hasanuzzaman, “Cultural, morphological and pathogenic characterization of Alternaria porri causing purple blotch of onion,” Not. Bot. Horti Agrobot. Cluj. Napoca., vol. 44, no. 1, pp. 222–227, Jun. 2016, doi: 10.15835/nbha44110110.

[3] B. S. Lakra, “Development of purple blotch incited by Alternaria porri and its losses in seed crop of onion (Allium cepa),” Indian Journal of Agricultural Sciences, vol. 69, no. 2, pp. 144 – 146, 1999, [Online]. Available: https://www.scopus.com/inward/record.uri?eid=2-s2.0-0033062455&partnerID=40&md5=be5c9f8dab18540ff0fabf07d41dad1e

[4] M. Tariq et al., “Biological control: a sustainable and practical approach for plant disease management,” Acta Agric. Scand. B Soil Plant Sci., vol. 70, no. 6, pp. 507–524, Aug. 2020, doi: 10.1080/09064710.2020.1784262.

[5] M. P. Das, P. Vennila Devi, and Y. Yasmine, “A study on antagonistic potential of bacteria against phytopathogenic fungi,” Int. J. Pharm. Sci. Rev. Res., vol. 34, no. 1, pp. 191 – 193, 2015, [Online]. Available: https://www.scopus.com/inward/record.uri?eid=2-s2.0-84942903449&partnerID=40&md5=ba32e6d483d7f0908f29f2b1073f6a2d

[6] Yunimar, A. S. Leksono, I. Mustafa, and Harwanto, “Antagonistic test of endophytic bacteria against the fungal pathogen Fusarium sp. in citrus plants,” BIO Web Conf., vol. 198, p. 01001, Dec. 2025, doi: 10.1051/bioconf/202519801001.

[7] M. Luo, H. Purdy, and T. J. Avis, “Compost bacteria provide antifungal activity against grey mold and Alternaria rot on bell pepper fruit,” Botany, vol. 97, no. 3, pp. 221–230, Mar. 2019, doi: 10.1139/cjb-2018-0180.

[8] S. S. Behera and R. C. Ray, “Bioprospecting of cowdung microflora for sustainable agricultural, biotechnological and environmental applications,” Curr. Res. Microb. Sci., vol. 2, p. 100018, Dec. 2021, doi: 10.1016/j.crmicr.2020.100018.

[9] P. F. Stanbury, Allan. Whitaker, and S. J. Hall, Principles of fermentation technology. Butterworth-Heinemann, an imprint of Elsevier, 2017.

[10] J. G. Cappuccino and Chad. Welsh, Microbiology: a laboratory manual. Pearson Education Limited: Pearson, 2018.

[11] O. Oksana, M. Irfan, A. R. Fianiray, and S. I. Zam, “Isolasi dan identifikasi bakteri pelarut fosfat pada tanah ultisol di Kecamatan Rumbai, Pekanbaru,” Agrotechnology Research Journal, vol. 4, no. 1, pp. 22–25, Jun. 2020, doi: 10.20961/agrotechresj.v4i1.36063.

[12] K. N. Rakesh, D. Chawhan, N. Nawaz, S. Junaid, and T. R. Prashith Kekuda, “Antifungal activity of cow urine against fungal pathogens causing rhizome rot of ginger,” Environment and Ecology, vol. 31, pp. 1241–1244, Jul. 2013.

[13] V. Romero-Yahuitl et al., “The archaeal and bacterial community structure in composted cow manures is defined by the original populations: a shotgun metagenomic approach,” Front. Microbiol., vol. 15, Nov. 2024, doi: 10.3389/fmicb.2024.1425548.

[14] D. Schwarcz, H. Levine, E. Ben-Jacob, and G. Ariel, “Uniform modeling of bacterial colony patterns with varying nutrient and substrate,” Physica D, vol. 318–319, pp. 91–99, Apr. 2016, doi: 10.1016/j.physd.2015.11.002.

[15] D. C. Olawoyin, A. T. Odeyemi, O. O. Osemwegie, and J. O. Folorunsho, “Screening and identifying cow dung bacteria for biogas production,” NIPES Journal of Science and Technology Research, vol. 7, no. 1, Oct. 2025, doi: 10.37933/nipes/7.4.2025.SI25.

[16] H. Kannan et al., “Spatiotemporal development of expanding bacterial colonies driven by emergent mechanical constraints and nutrient gradients,” Nat. Commun., vol. 16, no. 1, p. 4878, May 2025, doi: 10.1038/s41467-025-60004-z.

[17] R. Khandoori, K. Mondal, and P. Ghosh, “Resource limitation and population fluctuation drive spatiotemporal order in microbial communities,” Soft Matter, vol. 20, no. 18, pp. 3823–3835, 2024, doi: 10.1039/D4SM00066H.

[18] F. Khan, G.-J. Jeong, N. Tabassum, A. Mishra, and Y.-M. Kim, “Filamentous morphology of bacterial pathogens: regulatory factors and control strategies,” Appl. Microbiol. Biotechnol., vol. 106, no. 18, pp. 5835–5862, Sep. 2022, doi: 10.1007/s00253-022-12128-1.

[19] N. M. Ghaffar, P. L. Connerton, and I. F. Connerton, “Filamentation of Campylobacter in broth cultures,” Front. Microbiol., vol. 6, Jun. 2015, doi: 10.3389/fmicb.2015.00657.

[20] M. Calgin and H. Kalayci, “Early classification of Gram-negative bacteria with colony imaging and deep learning without coding experience,” Proceedings of the Bulgarian Academy of Sciences, vol. 77, no. 4, Apr. 2024, doi: 10.7546/CRABS.2024.04.04.

[21] S. K. Pradhan, N. R. Singh, S. Das, and H. Thatoi, “Molecular identification and phylogenetic analysis of chromium-resistant bacteria isolated from chromite mine area soil, Sukinda, India using 16S rRNA sequencing,” Soil and Sediment Contamination: An International Journal, vol. 29, no. 8, pp. 805–822, Nov. 2020, doi: 10.1080/15320383.2020.1771272.

[22] J. Yang, Y. Wang, X. Cui, Y. Zhang, and Z. Yu, “Do different livestock dwellings on single grassland share similar faecal microbial communities?,” Appl. Microbiol. Biotechnol., vol. 103, no. 12, pp. 5023–5037, Jun. 2019, doi: 10.1007/s00253-019-09849-1.

[23] C. Manyi-Loh, S. Mamphweli, E. Meyer, G. Makaka, M. Simon, and A. Okoh, “An overview of the control of bacterial pathogens in cattle manure,” Int. J. Environ. Res. Public Health, vol. 13, no. 9, p. 843, Aug. 2016, doi: 10.3390/ijerph13090843.

[24] X. Liu et al., “Community succession of microbial populations related to C N P S biological transformations regulates product maturity during cow-manure-driven composting,” Bioresour. Technol., vol. 369, p. 128493, Feb. 2023, doi: 10.1016/j.biortech.2022.128493.

[25] J. M. Sayre, D. Wang, J. Y. Lin, R. E. Danielson, K. M. Scow, and J. L. Mazza Rodrigues, “Repeated manure inputs to a forage production soil increase microbial biomass and diversity and select for lower abundance genera,” Agric. Ecosyst. Environ., vol. 354, p. 108567, Sep. 2023, doi: 10.1016/j.agee.2023.108567.

[26] A. N. Nozhevnikova, V. V. Mironov, E. A. Botchkova, Yu. V. Litti, and Yu. I. Russkova, “Composition of a microbial community at different stages of composting and the prospects for compost production from municipal organic waste (Review),” Appl. Biochem. Microbiol., vol. 55, no. 3, pp. 199–208, May 2019, doi: 10.1134/S0003683819030104.

[27] Q. Meng et al., “Microbial community succession and response to environmental variables during cow manure and corn straw composting,” Front. Microbiol., vol. 10, Mar. 2019, doi: 10.3389/fmicb.2019.00529.

[28] J. Li, Y.-T. Chen, Z.-Y. Xia, M. Gou, Z.-Y. Sun, and Y.-Q. Tang, “Changes in bacterial communities during a pilot-scale composting process of dairy manure,” Journal of Environmental Engineering, vol. 146, no. 9, Sep. 2020, doi: 10.1061/(ASCE)EE.1943-7870.0001774.




DOI: https://doi.org/10.18860/elha.v10i5.45721

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